SRX018651
GSM471807: RD, pFM2 IP lane 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
pFM2

Cell type

Cell type Class
Muscle
Cell type
RD
Primary Tissue
Skelatal Muscle
Tissue Diagnosis
Rhabdomyosarcoma

Attributes by original data submitter

Sample

source_name
RD, pFM2 IP
cell line
RD
cell type
rhabdomyosarcoma
pax3-fkhr status
negative
antibody
pFM2

Sequenced DNA Library

library_name
GSM471807: RD, pFM2 IP lane 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9211112
Reads aligned (%)
84.3
Duplicates removed (%)
17.4
Number of peaks
191 (qval < 1E-05)

hg19

Number of total reads
9211112
Reads aligned (%)
83.7
Duplicates removed (%)
18.2
Number of peaks
253 (qval < 1E-05)

Base call quality data from DBCLS SRA