SRX018528
GSM392055: ESC H3K4me3 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
R1 embryonic stem cells
chip antibody
H3K4me3

Sequenced DNA Library

library_name
GSM392055: ESC_H3K4me3_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7864518
Reads aligned (%)
55.5
Duplicates removed (%)
19.3
Number of peaks
9130 (qval < 1E-05)

mm9

Number of total reads
7864518
Reads aligned (%)
55.2
Duplicates removed (%)
19.3
Number of peaks
9184 (qval < 1E-05)

Base call quality data from DBCLS SRA