SRX018506
GSM521837: WT 2 RAP1-Chip-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Terf2ip

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
embryonic fibroblast
antibody
RAP1

Sequenced DNA Library

library_name
WT_2 RAP1-Chip-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19757812
Reads aligned (%)
75.9
Duplicates removed (%)
74.7
Number of peaks
479 (qval < 1E-05)

mm9

Number of total reads
19757812
Reads aligned (%)
75.8
Duplicates removed (%)
75.0
Number of peaks
470 (qval < 1E-05)

Base call quality data from DBCLS SRA