SRX018116
GSM523698: DP-WT-H3K4me1 [Methyl-Seq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
Double positive cells
strain
C57BL/6
genotype/variation
WT
cell type
Double-positive cells
antibody
anti-H3K4me1

Sequenced DNA Library

library_name
DP-WT-H3K4me1 [Methyl-Seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10967835
Reads aligned (%)
96.4
Duplicates removed (%)
9.8
Number of peaks
13036 (qval < 1E-05)

mm9

Number of total reads
10967835
Reads aligned (%)
96.4
Duplicates removed (%)
9.9
Number of peaks
13031 (qval < 1E-05)

Base call quality data from DBCLS SRA