SRX018103
GSM523223: CD4-Gata3 [ChIP-seq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Gata3

Cell type

Cell type Class
Blood
Cell type
Naive T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Naïve CD4 cells
strain
C57BL/6
cell type
Naive CD4 cells
chip antibody
anti-Gata3 (558686, BD bioscience)

Sequenced DNA Library

library_name
CD4-Gata3 [ChIP-seq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9147696
Reads aligned (%)
70.3
Duplicates removed (%)
43.9
Number of peaks
1876 (qval < 1E-05)

mm9

Number of total reads
9147696
Reads aligned (%)
70.2
Duplicates removed (%)
44.2
Number of peaks
1916 (qval < 1E-05)

Base call quality data from DBCLS SRA