Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12892

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Sample

source_name

Lymphoblastoid Cells

biomaterial_provider

GM12892

cell line

GM12892

cell type

Lymphoblastoid cell

treatment

TNF-alpha induced (6h)

chip antibody

normal rabbit IgG

Sequenced DNA Library

library_name

GM12892_NFkB_II_ChIPSeq_IgG_Rep1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

5014874

Reads aligned (%)

94.4

Duplicates removed (%)

3.0

Number of peaks

81 (qval < 1E-05)

hg19

Number of total reads

5014874

Reads aligned (%)

91.1

Duplicates removed (%)

2.8

Number of peaks

103 (qval < 1E-05)