Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Blood
Cell type
GM19193
Tissue
blood
Lineage
mesoderm
Description
lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed

Attributes by original data submitter

Sample

source_name
Lymphoblastoid Cells
biomaterial_provider
GM19193
cell line
GM19193
cell type
Lymphoblastoid cell
treatment
TNF-alpha induced (6h)
chip antibody
NFκB p65 (C-20) rabbit polyclonal antibody

Sequenced DNA Library

library_name
GM19193_NFkB_II_ChIPSeq_Rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
7750463
Reads aligned (%)
93.4
Duplicates removed (%)
2.0
Number of peaks
2064 (qval < 1E-05)

hg38

Number of total reads
7750463
Reads aligned (%)
94.7
Duplicates removed (%)
1.4
Number of peaks
1976 (qval < 1E-05)

Base call quality data from DBCLS SRA