SRX017857
GSM480449: bam PolII ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Adult
Cell type
Testis
NA
NA

Attributes by original data submitter

Sample

source_name
bam testis
cell type
bam testis
antibody
PolII
antibody manufacturer
Abcam
antibody catalog number
ab5408

Sequenced DNA Library

library_name
bam PolII ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
6602045
Reads aligned (%)
21.2
Duplicates removed (%)
6.5
Number of peaks
791 (qval < 1E-05)

dm3

Number of total reads
6602045
Reads aligned (%)
21.5
Duplicates removed (%)
4.7
Number of peaks
654 (qval < 1E-05)

Base call quality data from DBCLS SRA