SRX017728
GSM418307: HeLa-siWDR5-H4K16ac-HDACi-0h

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K16ac

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cell
cell type
HeLa cell
antibody
anti-H4K16ac Ab
sirna
siWDR5
treatment
n/a

Sequenced DNA Library

library_name
HeLa-siWDR5-H4K16ac-HDACi-0h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9033500
Reads aligned (%)
74.9
Duplicates removed (%)
3.2
Number of peaks
9 (qval < 1E-05)

hg19

Number of total reads
9033500
Reads aligned (%)
74.3
Duplicates removed (%)
3.5
Number of peaks
28 (qval < 1E-05)

Base call quality data from DBCLS SRA