SRX017725
GSM418304: HeLa-siWDR5-H3K9ac-HDACi-1h

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cell
cell type
HeLa cell
antibody
anti-H3K9ac Ab
sirna
siWDR5
treatment
Trichostatin + sodium butyrate for 1 hours

Sequenced DNA Library

library_name
HeLa-siWDR5-H3K9ac-HDACi-1h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8397062
Reads aligned (%)
73.0
Duplicates removed (%)
13.7
Number of peaks
72 (qval < 1E-05)

hg19

Number of total reads
8397062
Reads aligned (%)
72.5
Duplicates removed (%)
13.9
Number of peaks
108 (qval < 1E-05)

Base call quality data from DBCLS SRA