SRX017720
GSM418299: HeLa-siControl-H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cell
cell type
HeLa cell
antibody
anti-H3K4me3 Ab
sirna
siControl
treatment
n/a

Sequenced DNA Library

library_name
HeLa-siControl-H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5540674
Reads aligned (%)
75.8
Duplicates removed (%)
8.8
Number of peaks
16552 (qval < 1E-05)

hg19

Number of total reads
5540674
Reads aligned (%)
75.5
Duplicates removed (%)
8.9
Number of peaks
17130 (qval < 1E-05)

Base call quality data from DBCLS SRA