ChIP-Atlas: SRX017718

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: RNA polymerase
Antigen: RNA polymerase II

Cell type

Cell type Class: Blood
Cell type: CD4+ T cells
NA: NA

Attributes by original data submitter

Sample

source_name: CD4+ T cell
cell type: CD4+ T cell
antibody: anti-RNA Pol II Ab
sirna: n/a
treatment: Trichostatin + sodium butyrate for 2 hours

Sequenced DNA Library

library_name: CD4-PolII-HDACi-2h
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 17872445
Reads aligned (%): 62.2
Duplicates removed (%): 2.9
Number of peaks: 433 (qval < 1E-05)

hg19

Number of total reads: 17872445
Reads aligned (%): 61.5
Duplicates removed (%): 3.5
Number of peaks: 491 (qval < 1E-05)

Base call quality data from DBCLS SRA