SRX017061
GSM515667: PolII Nterm shControl1 ChIP Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
V6.5 mES cells
cell type
V6.5 mES cells
shrna
empty
small molecule
no
chip antibody
RNA Pol II (Rpb1 N-terminus)

Sequenced DNA Library

library_name
PolII_Nterm_shControl1_ChIP_Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10579485
Reads aligned (%)
66.3
Duplicates removed (%)
7.0
Number of peaks
19577 (qval < 1E-05)

mm9

Number of total reads
10579485
Reads aligned (%)
66.1
Duplicates removed (%)
7.3
Number of peaks
19632 (qval < 1E-05)

Base call quality data from DBCLS SRA