SRX017060
GSM515666: Ctr9 ChIP Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctr9

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
V6.5 mES cells
cell type
V6.5 mES cells
shrna
no
small molecule
no
chip antibody
Ctr9

Sequenced DNA Library

library_name
Ctr9_ChIP_Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8916083
Reads aligned (%)
69.3
Duplicates removed (%)
3.6
Number of peaks
1198 (qval < 1E-05)

mm9

Number of total reads
8916083
Reads aligned (%)
69.1
Duplicates removed (%)
3.9
Number of peaks
1208 (qval < 1E-05)

Base call quality data from DBCLS SRA