SRX017025
GSM489294: GM12891 CTCF REP2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cells
NA
NA

Attributes by original data submitter

Sample

source_name
lymphoblastoid cells
biomaterial_provider
NA12891
individual
NA12891

Sequenced DNA Library

library_name
GM12891_CTCF_REP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16454501
Reads aligned (%)
96.4
Duplicates removed (%)
22.6
Number of peaks
36643 (qval < 1E-05)

hg19

Number of total reads
16454501
Reads aligned (%)
93.7
Duplicates removed (%)
21.7
Number of peaks
37636 (qval < 1E-05)

Base call quality data from DBCLS SRA