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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Lymphoblastoid cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX017024
GSM489293: GM12891 CTCF REP1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
Lymphoblastoid cells
NA
NA
Attributes by original data submitter
Sample
source_name
lymphoblastoid cells
biomaterial_provider
NA12891
individual
NA12891
Sequenced DNA Library
library_name
GM12891_CTCF_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
13789987
Reads aligned (%)
95.5
Duplicates removed (%)
22.4
Number of peaks
33756 (qval < 1E-05)
hg19
Number of total reads
13789987
Reads aligned (%)
92.5
Duplicates removed (%)
21.5
Number of peaks
34657 (qval < 1E-05)
Base call quality data from
DBCLS SRA