SRX016997
GSM509048: HumanForeskinFibroblast Pol3ChIPseq Rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase III

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblast
NA
NA

Attributes by original data submitter

Sample

source_name
Human foreskin fibroblast hTERT cell line
antigen
RPC32 (Pol III)
chip antibody
sc-21754 (Santa Cruz Biotech.)

Sequenced DNA Library

library_name
HumanForeskinFibroblast_Pol3ChIPseq_Rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19136480
Reads aligned (%)
85.1
Duplicates removed (%)
26.4
Number of peaks
652 (qval < 1E-05)

hg19

Number of total reads
19136480
Reads aligned (%)
84.5
Duplicates removed (%)
27.4
Number of peaks
950 (qval < 1E-05)

Base call quality data from DBCLS SRA