SRX016974
GSM501686: ChIP Input control

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
Saos-2
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

source_name
Saos-2 cell line
cell line
Saos-2
cell type
osteosarcoma
antibody
none
genetic modification
None

Sequenced DNA Library

library_name
ChIP_Input_control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19715835
Reads aligned (%)
98.6
Duplicates removed (%)
3.6
Number of peaks
661 (qval < 1E-05)

hg19

Number of total reads
19715835
Reads aligned (%)
97.7
Duplicates removed (%)
5.4
Number of peaks
890 (qval < 1E-05)

Base call quality data from DBCLS SRA