SRX016856
GSM487557: Hiranull ES H33 EYFP antiH3K36me3 nChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
Hira -/- H3.3-EYFP / H3.3B
cell type
cl34 Hira -/- embryonic stem cells
chip antibody
H3K36me3 (Abcam ab9050)

Sequenced DNA Library

library_name
Hiranull_ES_H33_EYFP_antiH3K36me3_nChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
5288046
Reads aligned (%)
95.2
Duplicates removed (%)
13.2
Number of peaks
168 (qval < 1E-05)

mm9

Number of total reads
5288046
Reads aligned (%)
94.9
Duplicates removed (%)
13.5
Number of peaks
178 (qval < 1E-05)

Base call quality data from DBCLS SRA