SRX016854
GSM487555: Hiranull ES H33 EYFP antiGFP nChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
Hira -/- H3.3-EYFP / H3.3B
cell type
cl34 Hira -/- embryonic stem cells
chip antibody
anti-GFP (Cristea et al., 2005)

Sequenced DNA Library

library_name
Hiranull_ES_H33_EYFP_antiGFP_nChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13200528
Reads aligned (%)
93.0
Duplicates removed (%)
8.1
Number of peaks
706 (qval < 1E-05)

mm9

Number of total reads
13200528
Reads aligned (%)
92.8
Duplicates removed (%)
8.2
Number of peaks
641 (qval < 1E-05)

Base call quality data from DBCLS SRA