SRX016847
GSM487548: ES H32 HA H3K4me3 nChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
C57BL/6 H3.2-HA / H3.3B
cell type
C6 embryonic stem cells
chip antibody
H3K4me3 (Abcam ab8580)

Sequenced DNA Library

library_name
ES_H32_HA_H3K4me3_nChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
5066737
Reads aligned (%)
95.3
Duplicates removed (%)
21.2
Number of peaks
23100 (qval < 1E-05)

mm9

Number of total reads
5066737
Reads aligned (%)
95.1
Duplicates removed (%)
21.4
Number of peaks
23130 (qval < 1E-05)

Base call quality data from DBCLS SRA