SRX016832
GSM423360: ES H32 HA H3K36me3 xChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
strain
C57BL/6 H3.2-HA / H3.3B
cell type
C6 embryonic stem cells
passages
10-15
chip antibody
anti-H3K36me3

Sequenced DNA Library

library_name
ES_H32_HA_H3K36me3_xChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3463443
Reads aligned (%)
88.2
Duplicates removed (%)
6.0
Number of peaks
191 (qval < 1E-05)

mm9

Number of total reads
3463443
Reads aligned (%)
87.6
Duplicates removed (%)
6.5
Number of peaks
189 (qval < 1E-05)

Base call quality data from DBCLS SRA