SRX016705
GSM451991: RNAPII ChIP-Seq IHM036 (Illumina)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 cells
library
ChIP-Seq
antibody target
RNA Polymerase II (RNAPII)

Sequenced DNA Library

library_name
RNAPII_ChIP-Seq_IHM036 (Illumina)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
3289402
Reads aligned (%)
11.6
Duplicates removed (%)
15.0
Number of peaks
44 (qval < 1E-05)

hg19

Number of total reads
3289402
Reads aligned (%)
11.4
Duplicates removed (%)
15.3
Number of peaks
35 (qval < 1E-05)

Base call quality data from DBCLS SRA