SRX016329
GSM491291: Islet FAIRE-seq 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic islets
NA
NA

Attributes by original data submitter

Sample

source_name
pancreatic islet cells
tissue
Purified pancreatic islets

Sequenced DNA Library

library_name
Islet_FAIRE-seq 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
56720234
Reads aligned (%)
95.8
Duplicates removed (%)
7.4
Number of peaks
1758 (qval < 1E-05)

hg19

Number of total reads
56720234
Reads aligned (%)
94.7
Duplicates removed (%)
8.7
Number of peaks
1878 (qval < 1E-05)

Base call quality data from DBCLS SRA