SRX016198
Illumina sequencing of histone H3 lysine 4 tri-methylation (H3K4me3) sites in mouse embryo fibroblast tranduced with pCLBABE-MyoD retrovirus

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

Sequenced DNA Library

library_name
H3K4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18775526
Reads aligned (%)
83.1
Duplicates removed (%)
8.7
Number of peaks
22312 (qval < 1E-05)

mm9

Number of total reads
18775526
Reads aligned (%)
83.0
Duplicates removed (%)
8.8
Number of peaks
22387 (qval < 1E-05)

Base call quality data from DBCLS SRA