SRX016039
GSM497500: Mock ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Chromatin IP against Mock
chip antibody
Mock
cell line
IMR90
growth state
Growing, Quiescent, Senescent

Sequenced DNA Library

library_name
Mock ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10198545
Reads aligned (%)
43.6
Duplicates removed (%)
16.1
Number of peaks
8446 (qval < 1E-05)

hg19

Number of total reads
10198545
Reads aligned (%)
43.2
Duplicates removed (%)
16.6
Number of peaks
8132 (qval < 1E-05)

Base call quality data from DBCLS SRA