Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Jarid2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem cells
strain
129SvJae x C57BL/6
cell type
embryonic stem cells
passages
10-15
chip antibody
Jarid2

Sequenced DNA Library

library_name
Jarid2_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
18828274
Reads aligned (%)
73.4
Duplicates removed (%)
10.5
Number of peaks
15811 (qval < 1E-05)

mm9

Number of total reads
18828274
Reads aligned (%)
73.3
Duplicates removed (%)
10.6
Number of peaks
15776 (qval < 1E-05)

Base call quality data from DBCLS SRA