SRX014899
Illumina chromatin immunoprecipitates sequencing of genomic DNA library 'Solexa-14190' containing sample Jmj

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

cell line
mES
BI GSSR Sample Type
New Tech Library
BI GSSR Sample LSID
BROAD:SEQUENCING_SAMPLE:39008.0
BI GSSR Sample ID
39008.0
Sample ID
Jmj

Sequenced DNA Library

library_name
Solexa-14190
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18828274
Reads aligned (%)
73.4
Duplicates removed (%)
10.5
Number of peaks
15741 (qval < 1E-05)

mm9

Number of total reads
18828274
Reads aligned (%)
73.3
Duplicates removed (%)
10.6
Number of peaks
15773 (qval < 1E-05)

Base call quality data from DBCLS SRA