SRX014758
GSM468188: H3K27me3 ChIP-seq NB4 24hoursATRA, JM9a and JM9b

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
NB4 cells
agent
24 hours ATRA
antibody
H3K27me3

Sequenced DNA Library

library_name
H3K27me3_ChIP-seq_NB4_24hoursATRA, JM9a and JM9b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15859913
Reads aligned (%)
93.9
Duplicates removed (%)
4.1
Number of peaks
80 (qval < 1E-05)

hg19

Number of total reads
15859913
Reads aligned (%)
93.5
Duplicates removed (%)
4.4
Number of peaks
416 (qval < 1E-05)

Base call quality data from DBCLS SRA