SRX013100
GSM439454: E12-16 H3K9Me3 ChIPSeq 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Embryo
Cell type
12-16h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E12-16
development point
E12-16
antibody
H3K9me3
antibody manufacturer
Abcam
antibody catalog number
ab8898
antibody lot number
422485

Sequenced DNA Library

library_name
E12-16_H3K9Me3_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
7106889
Reads aligned (%)
96.9
Duplicates removed (%)
16.6
Number of peaks
3717 (qval < 1E-05)

dm3

Number of total reads
7106889
Reads aligned (%)
98.3
Duplicates removed (%)
11.9
Number of peaks
2152 (qval < 1E-05)

Base call quality data from DBCLS SRA