ChIP-Atlas: SRX013099

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Histone
Antigen: H3K9me3

Cell type

Cell type Class: Embryo
Cell type: 16-20h embryos
NA: NA

Attributes by original data submitter

Sample

source_name: E16-20
development point: E16-20
antibody: H3K9me3
antibody manufacturer: Abcam
antibody catalog number: ab8898
antibody lot number: 422485

Sequenced DNA Library

library_name: E16-20_H3K9Me3_ChIPSeq_1
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads: 7652899
Reads aligned (%): 96.4
Duplicates removed (%): 12.9
Number of peaks: 4498 (qval < 1E-05)

dm3

Number of total reads: 7652899
Reads aligned (%): 97.6
Duplicates removed (%): 8.3
Number of peaks: 5145 (qval < 1E-05)

Base call quality data from DBCLS SRA