SRX013061
GSM432578: E4-8 PolII ChIPSeq 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryo
Cell type
4-8h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E4-8
development point
E4-8
antibody
PolII
antibody manufacturer
Covance
antibody catalog number
MMS-126R
antibody lot number
14861301

Sequenced DNA Library

library_name
E4-8_PolII_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm3

Number of total reads
7780168
Reads aligned (%)
95.9
Duplicates removed (%)
23.0
Number of peaks
3668 (qval < 1E-05)

dm6

Number of total reads
7780168
Reads aligned (%)
95.6
Duplicates removed (%)
25.4
Number of peaks
3489 (qval < 1E-05)

Base call quality data from DBCLS SRA