Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CBP
wikigenes
PDBj
CellType: Pupae
ATCC
MeSH
RIKEN BRC
SRX013059
GSM408994: Pupae CBP ChIPSeq 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CBP
Cell type
Cell type Class
Pupae
Cell type
Pupae
NA
NA
Attributes by original data submitter
Sample
source_name
Pupae
tissue/development stage
Pupae
antibody
CBP
antibody provider
Dr. Mattias Mannervik in Stockholm University
Sequenced DNA Library
library_name
Pupae_CBP_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
3633782
Reads aligned (%)
54.5
Duplicates removed (%)
32.8
Number of peaks
1227 (qval < 1E-05)
dm6
Number of total reads
3633782
Reads aligned (%)
53.9
Duplicates removed (%)
33.3
Number of peaks
1243 (qval < 1E-05)
Base call quality data from
DBCLS SRA