SRX013007
GSM400660: L3 H3K4Me3 ChIPSeq 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Larvae
Cell type
3rd instar
NA
NA

Attributes by original data submitter

Sample

source_name
L3
tissue
L3
antibody
H3K4me3
antibody manufacturer
Abcam
antibody catalog number
ab8580
antibody lot number
411277

Sequenced DNA Library

library_name
L3_H3K4Me3_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
5172679
Reads aligned (%)
83.9
Duplicates removed (%)
9.6
Number of peaks
5133 (qval < 1E-05)

dm3

Number of total reads
5172679
Reads aligned (%)
84.2
Duplicates removed (%)
8.7
Number of peaks
5436 (qval < 1E-05)

Base call quality data from DBCLS SRA