SRX013005
GSM400658: E16-20 H3K4Me3 ChIPSeq 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
16-20h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E16-20
tissue
Embryos
time point
16-20h
antibody
H3K4me3
antibody manufacturer
Abcam
antibody catalog number
ab8580
antibody lot number
411277

Sequenced DNA Library

library_name
E16-20_H3K4Me3_ChIPSeq_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
6793597
Reads aligned (%)
96.5
Duplicates removed (%)
14.9
Number of peaks
8924 (qval < 1E-05)

dm3

Number of total reads
6793597
Reads aligned (%)
96.6
Duplicates removed (%)
14.1
Number of peaks
8968 (qval < 1E-05)

Base call quality data from DBCLS SRA