Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NANOG

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells
cell line
H1
chip antibody
NANOG

Sequenced DNA Library

library_name
hESC-NANOG-1a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
9591727
Reads aligned (%)
28.9
Duplicates removed (%)
33.9
Number of peaks
9131 (qval < 1E-05)

hg38

Number of total reads
9591727
Reads aligned (%)
29.1
Duplicates removed (%)
33.6
Number of peaks
9087 (qval < 1E-05)

Base call quality data from DBCLS SRA