SRX007389
ChIP-Seq analysis ofH3K4me1 in human H1 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
none
BIOMATERIAL_PROVIDER
Cellular Dynamics
BIOMATERIAL_TYPE
Cell Line
LINE
H1
LINEAGE
undifferentiated
DIFFERENTIATION_STAGE
stage_zero
DIFFERENTIATION_METHOD
none
PASSAGE
42
MEDIUM
TESR
SEX
Unknown
sample_term_id
EFO_0003042

Sequenced DNA Library

library_name
Solexa-10529
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11240266
Reads aligned (%)
91.2
Duplicates removed (%)
9.0
Number of peaks
213 (qval < 1E-05)

hg19

Number of total reads
11240266
Reads aligned (%)
90.7
Duplicates removed (%)
9.5
Number of peaks
223 (qval < 1E-05)

Base call quality data from DBCLS SRA