SRX007040
Control IgG in 293T

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

fixed sonicated chromatin
10
cell line
HEK293T
antibody sc-2027
2
fragment size
135 +/- 25
read length
50

Sequenced DNA Library

library_name
Control IgG-ChIP of 293T
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13341066
Reads aligned (%)
76.3
Duplicates removed (%)
5.4
Number of peaks
416 (qval < 1E-05)

hg19

Number of total reads
13341066
Reads aligned (%)
75.8
Duplicates removed (%)
6.2
Number of peaks
593 (qval < 1E-05)

Base call quality data from DBCLS SRA