SRX004757
Illumina sequencing of RNA Pol2 (Ser2 Phos.) ChIP in A549 Cells after 1h, 100nM Dexamethasone Treatment

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

publication_sample_number
15

Sequenced DNA Library

library_name
SL378
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42585756
Reads aligned (%)
56.5
Duplicates removed (%)
9.6
Number of peaks
28469 (qval < 1E-05)

hg19

Number of total reads
42585756
Reads aligned (%)
56.3
Duplicates removed (%)
9.7
Number of peaks
28425 (qval < 1E-05)

Base call quality data from DBCLS SRA