SRX003888
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smarca4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

cell type
E14Tg2a murine ES cells
chip antibody
anti-Brg/Brm Clone J1
developmental stage
E14

Sequenced DNA Library

library_name
E14Tg2a murine ES cells Brg J1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31410811
Reads aligned (%)
44.7
Duplicates removed (%)
15.6
Number of peaks
772 (qval < 1E-05)

mm9

Number of total reads
31410811
Reads aligned (%)
44.6
Duplicates removed (%)
15.7
Number of peaks
806 (qval < 1E-05)

Base call quality data from DBCLS SRA