SRX003864
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nanog

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

cell line
v6.5
cell type
embryonic stem cell
chip antibody
Nanog

Sequenced DNA Library

library_name
Nanog_mES_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
8927251
Reads aligned (%)
57.7
Duplicates removed (%)
7.9
Number of peaks
9163 (qval < 1E-05)

mm9

Number of total reads
8927251
Reads aligned (%)
57.6
Duplicates removed (%)
8.2
Number of peaks
9164 (qval < 1E-05)

Base call quality data from DBCLS SRA