SRX003862
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

cell line
v6.5
cell type
embryonic stem cell
chip antibody
HEK4me3

Sequenced DNA Library

library_name
HEK4me3_mES_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3732335
Reads aligned (%)
84.8
Duplicates removed (%)
4.3
Number of peaks
20347 (qval < 1E-05)

mm9

Number of total reads
3732335
Reads aligned (%)
84.7
Duplicates removed (%)
4.5
Number of peaks
20413 (qval < 1E-05)

Base call quality data from DBCLS SRA