SRX003845
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

cell type
Embyonic stem cells
chip antibody
H3K4me3
line
H9 (passage 45)

Sequenced DNA Library

library_name
hES_H3K4me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22955497
Reads aligned (%)
48.1
Duplicates removed (%)
10.5
Number of peaks
33576 (qval < 1E-05)

hg19

Number of total reads
22955497
Reads aligned (%)
47.8
Duplicates removed (%)
10.8
Number of peaks
33408 (qval < 1E-05)

Base call quality data from DBCLS SRA