SRX003794
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

cell type
primary CD4+ T cells
chip antibody
CTCF

Sequenced DNA Library

library_name
CD4+ T cell CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5922166
Reads aligned (%)
53.1
Duplicates removed (%)
9.2
Number of peaks
17974 (qval < 1E-05)

hg19

Number of total reads
5922166
Reads aligned (%)
52.7
Duplicates removed (%)
9.4
Number of peaks
18394 (qval < 1E-05)

Base call quality data from DBCLS SRA