ERX989300
Illumina HiSeq 2000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

ArrayExpress-CellType
K562 myelogenous leukemia
ArrayExpress-Immunoprecipitate
anti-CTCF
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo sapiens
ENA first public
2015-06-09
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3267188
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-06-09T14:27:35Z
INSDC last update
2018-03-08T23:48:13Z
INSDC status
public
Submitter Id
K562_CTCF_2-sc-2232823
common name
human
sample description
CTCF ChIP DNA
sample name
K562_CTCF_2-sc-2232823

Sequenced DNA Library

library_name
13117667
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15008065
Reads aligned (%)
98.3
Duplicates removed (%)
5.4
Number of peaks
38672 (qval < 1E-05)

hg19

Number of total reads
15008065
Reads aligned (%)
97.7
Duplicates removed (%)
5.5
Number of peaks
38258 (qval < 1E-05)

Base call quality data from DBCLS SRA