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For hg38
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX989292
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
ArrayExpress-CellType
K562 myelogenous leukemia
ArrayExpress-Immunoprecipitate
anti-H3K4me3
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo sapiens
ENA first public
2015-06-09
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3267180
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-06-09T14:27:35Z
INSDC last update
2018-03-08T23:29:06Z
INSDC status
public
Submitter Id
K562_K4me3_1-sc-2232815
common name
human
sample description
K4me3 ChIP DNA
sample name
K562_K4me3_1-sc-2232815
Sequenced DNA Library
library_name
13117659
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
16730892
Reads aligned (%)
98.6
Duplicates removed (%)
3.9
Number of peaks
23349 (qval < 1E-05)
hg19
Number of total reads
16730892
Reads aligned (%)
98.5
Duplicates removed (%)
3.9
Number of peaks
23207 (qval < 1E-05)
Base call quality data from
DBCLS SRA