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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX989277
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
ArrayExpress-CellType
K562 myelogenous leukemia
ArrayExpress-Phenotype
Normal
ArrayExpress-Species
Homo sapiens
ENA first public
2015-06-09
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3267185
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-06-09T14:27:35Z
INSDC last update
2018-03-08T23:48:13Z
INSDC status
public
Submitter Id
K562_his_input_2-sc-2232820
common name
human
sample description
Input DNA
sample name
K562_his_input_2-sc-2232820
Sequenced DNA Library
library_name
13117664
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
12725882
Reads aligned (%)
98.2
Duplicates removed (%)
68.5
Number of peaks
13 (qval < 1E-05)
hg19
Number of total reads
12725882
Reads aligned (%)
96.2
Duplicates removed (%)
67.4
Number of peaks
148 (qval < 1E-05)
Base call quality data from
DBCLS SRA