ERX975441
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus musculus
ENA first public
2015-05-19
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3209397
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-05-19T13:38:52Z
INSDC last update
2018-03-08T22:41:29Z
INSDC status
public
Submitter Id
5_1_input-sc-2204492
common name
house mouse
sample description
ChipSeq library
sample name
5_1_input-sc-2204492
strain
E14

Sequenced DNA Library

library_name
12751449
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27610871
Reads aligned (%)
97.7
Duplicates removed (%)
32.9
Number of peaks
487 (qval < 1E-05)

mm9

Number of total reads
27610871
Reads aligned (%)
97.6
Duplicates removed (%)
33.0
Number of peaks
479 (qval < 1E-05)

Base call quality data from DBCLS SRA