ERX964699
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus musculus
ENA first public
2015-05-19
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2820535
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-05-19T13:44:14Z
INSDC last update
2018-03-08T20:26:16Z
INSDC status
public
Submitter Id
V_2i_vector-sc-2149126
common name
house mouse
sample description
ChiP DNA
sample name
V_2i_vector-sc-2149126

Sequenced DNA Library

library_name
12033505
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27165320
Reads aligned (%)
96.7
Duplicates removed (%)
8.9
Number of peaks
2315 (qval < 1E-05)

mm9

Number of total reads
27165320
Reads aligned (%)
96.5
Duplicates removed (%)
9.0
Number of peaks
2427 (qval < 1E-05)

Base call quality data from DBCLS SRA