ERX964689
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-Species
Mus musculus
ENA first public
2015-05-19
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2820534
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2015-05-19T13:44:14Z
INSDC last update
2018-03-08T20:58:36Z
INSDC status
public
Submitter Id
T_2i_FL-sc-2149125
common name
house mouse
sample description
ChiP DNA
sample name
T_2i_FL-sc-2149125

Sequenced DNA Library

library_name
12033504
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24887461
Reads aligned (%)
97.1
Duplicates removed (%)
10.1
Number of peaks
3797 (qval < 1E-05)

mm9

Number of total reads
24887461
Reads aligned (%)
96.9
Duplicates removed (%)
10.2
Number of peaks
3913 (qval < 1E-05)

Base call quality data from DBCLS SRA